segName='   A'
seq="""
MET ILE SER VAL ASN ASP PHE LYS THR GLY 
LEU THR ILE SER VAL ASP ASN ALA ILE TRP 
LYS VAL ILE ASP PHE GLN HIS VAL LYS PRO 
GLY LYS GLY SER ALA PHE VAL ARG SER LYS 
LEU ARG ASN LEU ARG THR GLY ALA ILE GLN 
GLU LYS THR PHE ARG ALA GLY GLU LYS VAL 
GLU PRO ALA MET ILE GLU ASN ARG ARG MET 
GLN TYR LEU TYR ALA ASP GLY ASP ASN HIS 
VAL PHE MET ASP ASN GLU SER PHE GLU GLN 
THR GLU LEU SER SER ASP TYR LEU LYS GLU 
GLU LEU ASN TYR LEU LYS GLU GLY MET GLU 
VAL GLN ILE GLN THR TYR GLU GLY GLU THR 
ILE GLY VAL GLU LEU PRO LYS THR VAL GLU 
LEU THR VAL THR GLU THR GLU PRO GLY ILE 
LYS GLY ASP THR ALA THR GLY ALA THR LYS 
SER ALA THR VAL GLU THR GLY TYR THR LEU 
ASN VAL PRO LEU PHE VAL ASN GLU GLY ASP 
VAL LEU ILE ILE ASN THR GLY ASP GLY SER 
TYR ILE SER ARG GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
