segName='   A'
seq="""
PCA ALA GLN ALA LEU LEU PRO ILE ALA SER 
TYR ALA GLY LEU THR VAL SER ALA PRO VAL 
PHE ALA ALA LEU VAL THR VAL TYR GLY ALA 
TYR ALA LEU TYR ARG TYR ASN ILE ARG ARG 
ARG GLU ASN SER TYR GLN ARG ILE ARG SER 
ASP HIS ASP SER HIS SER CYS ALA ASN ASN 
ARG GLY TRP CYS ARG PRO THR CYS PHE SER 
HIS GLU TYR THR ASP TRP PHE ASN ASN ASP 
VAL CYS GLY SER TYR ARG CYS CYS ARG PRO 
GLY ARG .
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
