segName='   A'
seq="""
MET GLN THR ASP LEU PHE TYR THR MET LYS 
ALA ALA GLY SER GLY GLY SER GLY GLY SER 
GLY GLY SER GLN ASP LEU TYR ALA THR LEU 
ASP VAL PRO ALA PRO ILE ALA VAL VAL GLY 
GLY LYS VAL ARG ALA MET THR LEU GLU GLY 
PRO VAL GLU VAL ALA VAL PRO PRO ARG THR 
GLN ALA GLY ARG LYS LEU ARG LEU LYS GLY 
LYS GLY PHE PRO GLY PRO ALA GLY ARG GLY 
ASP LEU TYR LEU GLU VAL ARG ILE THR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
