segName='   A'
seq="""
GLY SER VAL GLU LYS LEU THR ALA ASP ALA 
GLU LEU GLN ARG LEU LYS ASN GLU ARG HIS 
GLU GLU ALA GLU LEU GLU ARG LEU LYS SER 
GLU ARG HIS ASP HIS ASP LYS LYS GLU ALA 
GLU ARG LYS ALA LEU GLU ASP LYS LEU ALA 
ASP TYR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
