segName='   B'
seq="""
MET GLN ILE PHE VAL LYS THR LEU THR GLY 
LYS THR ILE THR LEU GLU VAL GLU PRO SER 
ASP THR ILE GLU ASN VAL LYS ALA LYS ILE 
GLN ASP LYS GLU GLY ILE PRO PRO ASP GLN 
GLN ARG LEU ILE PHE ALA GLY ARG GLN LEU 
GLU ASP GLY ARG THR LEU SER ASP TYR ASN 
ILE GLN LYS GLU SER THR LEU HIS LEU VAL 
LEU ARG LEU ARG GLY GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
