segName='   A'
seq="""
SER HIS MET GLY GLU LEU GLU ALA ILE VAL 
GLY LEU GLY LEU MET TYR SER GLN LEU PRO 
HIS HIS ILE LEU ALA ASP VAL SER LEU LYS 
GLU THR GLU GLU ASN LYS THR LYS GLY PHE 
ASP TYR LEU LEU LYS ALA ALA GLU ALA GLY 
ASP ARG GLN SER MET ILE LEU VAL ALA ARG 
ALA PHE ASP SER GLY GLN ASN LEU SER PRO 
ASP ARG CYS GLN ASP TRP LEU GLU ALA LEU 
HIS TRP TYR ASN THR ALA LEU GLU MET THR 
ASP CYS ASP GLU GLY GLY GLU TYR ASP GLY 
MET GLN ASP GLU PRO ARG TYR MET MET LEU 
ALA ARG GLU ALA GLU MET LEU PHE THR GLY 
GLY TYR GLY LEU GLU LYS ASP PRO GLN ARG 
SER GLY ASP LEU TYR THR GLN ALA ALA GLU 
ALA ALA MET GLU ALA MET LYS GLY ARG LEU 
ALA ASN GLN TYR TYR GLN LYS ALA GLU GLU 
ALA TRP ALA GLN MET GLU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
