segName='   A'
seq="""
GLY LYS ASN LYS SER LYS ARG ILE GLN ALA 
LEU LYS PHE ARG HIS ALA ARG ASP LYS ARG 
ALA GLY PHE GLU ILE ASP ASN ASN ASP ASP 
THR ILE GLU GLU PHE PHE GLY SER ALA TYR 
ARG LYS LYS GLY LYS GLY LYS GLY THR THR 
VAL GLY MET GLY LYS SER SER ARG ARG PHE 
ILE ASN MET TYR GLY PHE ASP PRO THR GLU 
TYR SER PHE ILE GLN PHE VAL ASP PRO LEU 
THR GLY ALA GLN ILE GLU GLU ASN VAL TYR 
ALA ASP ILE ARG ASP ILE GLN GLU ARG PHE 
SER GLU VAL ARG LYS LYS MET VAL GLU ASN 
ASP ASP ILE GLU MET GLN ALA LEU GLY SER 
ASN THR THR ILE HIS ALA TYR PHE ARG LYS 
ASP TRP SER ASP LYS ALA LEU LYS ILE ASP 
LEU MET PRO HIS ASN PRO LEU LYS VAL CYS 
ASP LYS THR ASN GLY ILE ALA LYS PHE PRO 
GLU ARG GLU LEU GLU LEU ARG GLN THR GLY 
PRO ALA VAL GLU VAL ASP VAL LYS ASP ILE 
PRO ALA GLN GLU VAL GLU HIS GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
