segName='   A'
seq="""
SER HIS MET GLN THR PRO GLU THR ALA PHE 
ILE ASN ASN VAL THR SER ASN GLY GLY TYR 
HIS SER TRP HIS LEU VAL SER GLY ASP LEU 
ILE VAL LYS ASP VAL CYS TYR LYS LYS LEU 
LEU HIS TRP SER GLY GLN THR ILE CYS TYR 
ALA ASP ASN LYS PHE TYR VAL VAL LYS ASN 
ASP VAL ALA LEU PRO PHE SER ASP LEU GLU 
ALA CYS ARG ALA TYR LEU THR SER ARG ALA 
ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
