segName='   A'
seq="""
MET GLN TYR LYS LEU ILE LEU ASN GLY LYS 
THR LEU LYS GLY GLU THR THR THR GLU ALA 
VAL ASP ALA ALA THR ALA GLU LYS VAL PHE 
LYS GLN TYR ALA ASN ASP ASN GLY VAL ASP 
GLY GLU TRP THR TYR ASP ASP ALA THR LYS 
THR PHE THR VAL THR GLU GLY SER HIS HIS 
HIS HIS HIS HIS MET SER GLY GLY GLY VAL 
ILE ARG GLY PRO ALA GLY ASN ASN ASP CYS 
ARG ILE TYR VAL GLY ASN LEU PRO PRO ASP 
ILE ARG THR LYS ASP ILE GLU ASP VAL PHE 
SER LYS TYR GLY ALA ILE ARG ASP ILE ASP 
LEU LYS ASN ARG ARG GLY GLY PRO PRO PHE 
ALA PHE VAL GLU PHE GLU ASP PRO ARG ASP 
ALA GLU ASP ALA VAL SER GLY ARG ASP GLY 
TYR ASP TYR ASP GLY TYR ARG LEU ARG VAL 
GLU PHE PRO ARG SER GLY ARG GLY THR GLY 
ARG
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
