segName='   A'
seq="""
THR VAL VAL GLU PHE GLU GLU LEU ARG LYS 
GLU LEU VAL LYS ARG ASP SER GLY LYS PRO 
VAL GLU LYS ILE LYS GLU GLU ILE CYS THR 
LYS SER PRO PRO LYS LEU ILE LYS GLU ILE 
ILE CYS GLU ASN LYS THR TYR ALA ASP VAL 
ASN ILE ASP ARG SER ARG GLY ASP TRP HIS 
VAL ILE LEU TYR LEU MET LYS HIS GLY VAL 
THR ASP PRO ASP LYS ILE LEU GLU LEU LEU 
PRO ARG ASP SER LYS ALA LYS GLU ASN GLU 
LYS TRP ASN THR GLN LYS TYR PHE VAL ILE 
THR LEU SER LYS ALA TRP SER VAL VAL LYS 
LYS TYR LEU GLU ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
