segName='   A'
seq="""
MET GLU ASN TYR LEU ARG LYS ALA ALA LEU 
THR ASP MET LEU GLN THR PHE VAL PRO TYR 
ARG THR ALA VAL GLU LEU CYS ALA LEU GLU 
HIS GLY GLY LEU ASP THR CYS ASP GLY GLY 
SER ASN GLY ILE PRO SER PRO THR THR THR 
ARG TYR VAL SER ALA MET SER VAL ALA LYS 
GLY VAL VAL SER LEU THR GLY GLN GLU SER 
LEU ASN GLY LEU SER VAL VAL MET THR PRO 
GLY TRP ASP ASN ALA ASN GLY VAL THR GLY 
TRP ALA ARG ASN CYS ASN ILE GLN SER ASP 
SER ALA LEU GLN GLN ALA CYS GLU ASP VAL 
PHE ARG PHE ASP ASP ALA ASN LEU VAL PRO 
ARG GLY SER GLY LEU GLU HIS HIS HIS HIS 
HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
