segName='   A'
seq="""
PCA ILE GLU THR ASN LYS LYS CYS GLN GLY 
GLY SER CYS ALA SER VAL CYS ARG LYS VAL 
ILE GLY VAL ALA ALA GLY LYS CYS ILE ASN 
GLY ARG CYS VAL CYS TYR PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
