segName='   A'
seq="""
GLY ALA MET GLY SER ILE VAL SER LEU LEU 
GLY ILE LYS VAL LEU ASN ASN PRO ALA LYS 
PHE THR ASP PRO TYR GLU PHE GLU ILE THR 
PHE GLU CYS LEU GLU SER LEU LYS HIS ASP 
LEU GLU TRP LYS LEU THR TYR VAL GLY SER 
SER ARG SER LEU ASP HIS ASP GLN GLU LEU 
ASP SER ILE LEU VAL GLY PRO VAL PRO VAL 
GLY VAL ASN LYS PHE VAL PHE SER ALA ASP 
PRO PRO SER ALA GLU LEU ILE PRO ALA SER 
GLU LEU VAL SER VAL THR VAL ILE LEU LEU 
SER CYS SER TYR ASP GLY ARG GLU PHE VAL 
ARG VAL GLY TYR TYR VAL ASN ASN GLU TYR 
ASP GLU GLU GLU LEU ARG GLU ASN PRO PRO 
ALA LYS VAL GLN VAL ASP HIS ILE VAL ARG 
ASN ILE LEU ALA GLU LYS PRO ARG VAL THR 
ARG PHE ASN ILE VAL TRP ASP ASN GLU ASN 
GLU GLY ASP LEU TYR PRO PRO GLU GLN PRO 
GLY VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
