segName='   A'
seq="""
ASP GLU ALA ALA GLU LEU MET GLN GLN VAL 
LYS VAL LEU LYS LEU THR VAL GLU ASP LEU 
GLU LYS GLU ARG ASP PHE TYR PHE GLY LYS 
LEU ARG ASN ILE GLU LEU ILE CYS GLN GLU 
ASN GLU GLY GLU ASN ASP PRO VAL LEU GLN 
ARG ILE VAL ASP ILE LEU TYR ALA THR ASP 
GLU GLY PHE VAL ILE PRO ASP GLU GLY GLY 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
