segName='   A'
seq="""
GLY SER GLU SER GLN ASN ASP GLU LYS ALA 
LEU LEU ASP GLN LEU ASP SER LEU LEU SER 
SER THR ASP GLU MET GLU LEU ALA GLU ILE 
ASP ARG ALA LEU GLY ILE ASP LYS LEU VAL 
SER GLN GLN GLY GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
