segName='   A'
seq="""
GLY SER HIS MET ASP ASN GLN LYS ALA LEU 
GLU GLU GLN MET ASN SER ILE ASN SER VAL 
ASN ASP LYS LEU ASN LYS GLY LYS GLY LYS 
LEU SER LEU SER MET ASN GLY ASN GLN LEU 
LYS ALA THR SER SER ASN ALA GLY TYR GLY 
ILE SER TYR GLU ASP LYS ASN TRP GLY ILE 
PHE VAL ASN GLY GLU LYS VAL TYR THR PHE 
ASN GLU LYS SER THR VAL GLY ASN ILE SER 
ASN ASP ILE ASN LYS LEU ASN ILE LYS GLY 
PRO TYR ILE GLU ILE LYS GLN ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
