segName='   A'
seq="""
GLY PRO GLY SER MET THR THR SER GLY ALA 
LEU PHE PRO SER LEU VAL PRO GLY SER ARG 
GLY ALA SER ASN LYS TYR LEU VAL GLU PHE 
ARG ALA GLY LYS MET SER LEU LYS GLY THR 
THR VAL THR PRO ASP LYS ARG LYS GLY LEU 
VAL TYR ILE GLN GLN THR ASP ASP SER LEU 
ILE HIS PHE CYS TRP LYS ASP ARG THR SER 
GLY ASN VAL GLU ASP ASP LEU ILE ILE PHE 
PRO ASP ASP CYS GLU PHE LYS ARG VAL PRO 
GLN CYS PRO SER GLY ARG VAL TYR VAL LEU 
LYS PHE LYS ALA GLY SER LYS ARG LEU PHE 
PHE TRP MET GLN GLU PRO LYS THR ASP GLN 
ASP GLU GLU HIS CYS ARG LYS VAL ASN GLU 
TYR LEU ASN ASN PRO PRO MET PRO GLY ALA 
LEU GLY ALA SER GLY SER SER GLY HIS GLU 
LEU SER ALA LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
