segName='   A'
seq="""
GLY HIS MET TRP ASN LEU ALA THR SER MET 
MET LYS ILE LEU ARG PRO GLY ARG LEU THR 
GLY GLU LEU PRO PRO GLY ALA VAL ARG ILE 
GLY ARG ALA ASN ASP ASN ASP ILE VAL ILE 
PRO GLU VAL LEU ALA SER ARG HIS HIS ALA 
THR LEU VAL PRO THR PRO GLY GLY THR GLU 
ILE ARG ASP ASN ARG SER ILE ASN GLY THR 
PHE VAL ASN GLY ALA ARG VAL ASP ALA ALA 
LEU LEU HIS ASP GLY ASP VAL VAL THR ILE 
GLY ASN ILE ASP LEU VAL PHE ALA ASP GLY 
THR LEU ALA ARG ARG GLU GLU ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
