segName='   A'
seq="""
MET GLY SER SER HIS HIS HIS HIS HIS HIS 
SER SER GLY ARG GLU ASN LEU TYR PHE GLN 
GLY MET PRO VAL ASP LEU THR PRO TYR ILE 
LEU PRO GLY VAL SER PHE LEU SER ASP ILE 
PRO GLN GLU THR LEU SER GLU ILE ARG ASN 
GLN THR ILE ARG GLY GLU ALA GLN ILE ARG 
LEU GLY GLU LEU MET VAL SER ILE ARG PRO 
MET GLN VAL ASN GLY TYR PHE MET GLY SER 
LEU ASN GLN ASP GLY LEU SER ASN ASP ASN 
ILE GLN ILE GLY LEU GLN TYR ILE GLU HIS 
ILE GLU ARG THR LEU ASN HIS GLY SER LEU 
THR SER ARG GLU VAL THR VAL LEU ARG GLU 
ILE GLU MET LEU GLU ASN MET ASP LEU LEU 
SER ASN TYR GLN LEU GLU GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
