segName='   A'
seq="""
GLY SER GLU PHE GLY PRO TRP LYS GLU ASP 
SER HIS ILE VAL SER ALA GLU VAL GLY GLU 
LYS CYS GLU ALA ILE GLY VAL LYS LEU LEU 
HIS LEU GLU ASP GLN LEU LEU GLY ALA MET 
TYR SER HIS ASP GLU ALA LEU PHE GLN SER 
LEU GLN GLY GLU LEU GLN THR VAL LYS GLU 
THR LEU GLN ALA MET ILE LEU GLN LEU GLN 
PRO THR LYS GLU ALA GLY GLU ALA SER ALA 
SER TYR PRO THR ALA GLY ALA GLN GLU THR 
GLU ALA LEU VAL PRO ARG GLY SER GLY PHE 
GLY THR SER PRO LEU THR PRO SER ALA ARG 
ILE SER ALA LEU ASN ILE VAL GLY ASP LEU 
LEU ARG LYS VAL GLY ALA LEU GLU SER LYS 
LEU ALA ALA CYS ARG ASN PHE ALA LYS ASP 
GLN ALA SER ARG LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
