segName='   A'
seq="""
MET PRO VAL THR GLU GLN GLY LEU ARG GLU 
ARG ILE GLU SER ALA ILE PRO GLN VAL TYR 
HIS ILE ILE VAL THR ASP LEU SER TYR GLY 
CYS GLY GLN SER PHE ASP ILE VAL VAL VAL 
SER ASP PHE PHE GLN GLY LYS SER LYS LEU 
MET ARG SER ARG ALA VAL ASN LYS ALA VAL 
LYS GLU GLU LEU GLN GLU ILE HIS ALA PHE 
SER CYS LYS CYS TYR THR GLU GLU GLU TRP 
SER LYS ILE VAL VAL LEU GLU HIS HIS HIS 
HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
