segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS SER SER GLY 
ARG GLY SER ALA GLN THR PHE LEU PHE GLN 
GLY GLN PRO VAL VAL ASN ARG PRO LEU SER 
LEU LYS ASP GLN GLN THR PHE ALA ARG SER 
VAL GLY LEU LYS TRP ARG LYS VAL GLY ARG 
SER LEU GLN ARG GLY CYS ARG ALA LEU ARG 
ASP PRO ALA LEU ASP SER LEU ALA TYR GLU 
TYR GLU ARG GLU GLY LEU TYR GLU GLN ALA 
PHE GLN LEU LEU ARG ARG PHE VAL GLN ALA 
GLU GLY ARG ARG ALA THR LEU GLN ARG LEU 
VAL GLU ALA LEU GLU GLU ASN GLU LEU THR 
SER LEU ALA GLU ASP LEU LEU GLY LEU THR 
ASP PRO ASN GLY GLY LEU ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
