segName='   A'
seq="""
HIS MET GLY ASP LYS SER GLU ASN VAL GLN 
ASP LEU LEU LEU LEU ASP VAL ALA PRO LEU 
SER LEU GLY LEU GLU THR ALA GLY GLY VAL 
MET THR ALA LEU ILE LYS ARG ASN SER THR 
ILE PRO THR LYS GLN THR GLN ILE PHE THR 
THR TYR SER ASP ASN GLN PRO GLY VAL LEU 
ILE GLN VAL TYR GLU GLY GLU ARG ALA MET 
THR LYS ASP ASN ASN LEU LEU GLY ARG PHE 
GLU LEU SER GLY ILE PRO PRO ALA PRO ARG 
GLY VAL PRO GLN ILE GLU VAL THR PHE ASP 
ILE ASP ALA ASN GLY ILE LEU ASN VAL THR 
ALA THR ASP LYS SER THR GLY LYS ALA ASN 
LYS ILE THR ILE THR ASN ASP LYS GLY ARG 
LEU SER LYS GLU GLU ILE GLU ARG MET VAL 
GLN GLU ALA GLU LYS TYR LYS ALA GLU ASP 
GLU VAL GLN ARG GLU ARG VAL SER ALA LYS 
ASN ALA TYR GLU SER TYR ALA PHE ASN MET 
LYS SER ALA VAL GLU ASP GLU GLY LEU LYS 
GLY LYS ILE SER GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
