segName='   A'
seq="""
GLU GLU GLU CYS CYS ILE CYS MET ASP GLY 
ARG ALA ASP LEU ILE LEU PRO CYS ALA HIS 
SER PHE CYS GLN LYS CYS ILE ASP LYS TRP 
SER ASP ARG HIS ARG ASN CYS PRO ILE CYS 
ARG LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
