segName='   A'
seq="""
THR GLN SER HIS TYR GLY GLN CYS GLY GLY 
ILE GLY TYR SER GLY PRO THR VAL CYS ALA 
SER GLY THR THR CYS GLN VAL LEU ASN PRO 
TYR TYR SER GLN CYS LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
