segName='   A'
seq="""
ALA ASP ALA GLN LYS ALA ALA ASP ASN LYS 
LYS PRO VAL ASN SER TRP THR CYS GLU ASP 
PHE LEU ALA VAL ASP GLU SER PHE GLN PRO 
THR ALA VAL GLY PHE ALA GLU ALA LEU ASN 
ASN LYS ASP LYS PRO GLU ASP ALA VAL LEU 
ASP VAL GLN GLY ILE ALA THR VAL THR PRO 
ALA ILE VAL GLN ALA CYS THR GLN ASP LYS 
GLN ALA ASN PHE LYS ASP LYS VAL LYS GLY 
GLU TRP ASP LYS ILE LYS LYS ASP MET
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
