segName='   A'
seq="""
GLY HIS MET SER SER LYS ILE PHE LYS ASN 
CYS VAL ILE TYR ILE ASN GLY TYR THR LYS 
PRO GLY ARG LEU GLN LEU HIS GLU MET ILE 
VAL LEU HIS GLY GLY LYS PHE LEU HIS TYR 
LEU SER SER LYS LYS THR VAL THR HIS ILE 
VAL ALA SER ASN LEU PRO LEU LYS LYS ARG 
ILE GLU PHE ALA ASN TYR LYS VAL VAL SER 
PRO ASP TRP ILE VAL ASP SER VAL LYS GLU 
ALA ARG LEU LEU PRO TRP GLN ASN TYR SER 
LEU THR SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
