segName='   A'
seq="""
GLY ALA VAL SER GLU SER GLN LEU LYS LYS 
MET VAL SER LYS TYR LYS TYR ARG ASP LEU 
THR VAL ARG GLU THR VAL ASN VAL ILE THR 
LEU TYR LYS ASP LEU LYS PRO VAL LEU ASP 
SER TYR VAL PHE ASN ASP GLY SER SER ARG 
GLU LEU MET ASN LEU THR GLY THR ILE PRO 
VAL PRO TYR ARG GLY ASN THR TYR ASN ILE 
PRO ILE CYS LEU TRP LEU LEU ASP THR TYR 
PRO TYR ASN PRO PRO ILE CYS PHE VAL LYS 
PRO THR SER SER MET THR ILE LYS THR GLY 
LYS HIS VAL ASP ALA ASN GLY LYS ILE TYR 
LEU PRO TYR LEU HIS GLU TRP LYS HIS PRO 
GLN SER ASP LEU LEU GLY LEU ILE GLN VAL 
MET ILE VAL VAL PHE GLY ASP GLU PRO PRO 
VAL PHE SER ARG PRO
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
