segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS MET ARG LYS 
GLU SER TYR SER ILE TYR VAL TYR LYS VAL 
LEU LYS GLN VAL HIS PRO ASP THR GLY ILE 
SER SER LYS ALA MET GLY ILE MET ASN SER 
PHE VAL ASN ASP ILE PHE GLU ARG ILE ALA 
GLY GLU ALA SER ARG LEU ALA HIS TYR ASN 
LYS ARG SER THR ILE THR SER ARG GLU ILE 
GLN THR ALA VAL ARG LEU LEU LEU PRO GLY 
GLU LEU ALA LYS HIS ALA VAL SER GLU GLY 
THR LYS ALA VAL THR LYS TYR THR SER SER 
ALA SER ALA LYS THR ARG SER SER ARG ALA 
GLY LEU GLN PHE PRO VAL GLY ARG VAL HIS 
ARG LEU LEU ARG LYS GLY ASN TYR SER GLU 
ARG VAL GLY ALA GLY ALA PRO VAL TYR LEU 
ALA ALA VAL LEU GLU TYR LEU THR ALA GLU 
ILE LEU GLU LEU ALA GLY ASN ALA ALA ARG 
ASP ASN LYS LYS THR ARG ILE ILE PRO ARG 
HIS LEU GLN LEU ALA ILE ARG ASN ASP GLU 
GLU LEU ASN LYS LEU LEU GLY ARG VAL THR 
ILE ALA GLN GLY
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
