segName='   A'
seq="""
GLY ARG CYS THR LYS SER ILE PRO PRO ILE 
CYS PHE PRO ASP GLY LEU ASP ASN PRO ARG 
GLY CYS GLN ILE ARG ILE GLN GLN LEU ASN 
HIS CYS GLN MET HIS LEU THR SER PHE ASP 
TYR LYS LEU ARG MET ALA VAL GLU ASN PRO 
LYS GLN GLN GLN HIS LEU SER LEU CYS CYS 
ASN GLN LEU GLN GLU VAL GLU LYS GLN CYS 
GLN CYS GLU ALA ILE LYS GLN VAL VAL GLU 
GLN ALA GLN LYS GLN LEU GLN GLN GLY GLN 
GLY GLY GLN GLN GLN VAL GLN GLN MET VAL 
LYS LYS ALA GLN MET LEU PRO ASN GLN CYS 
ASN LEU GLN CYS SER ILE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
