segName='   A'
seq="""
MET ALA VAL SER VAL THR PRO ILE ARG ASP 
THR LYS TRP LEU THR LEU GLU VAL CYS ARG 
GLU PHE GLN ARG GLY THR CYS SER ARG PRO 
ASP THR GLU CYS LYS PHE ALA HIS PRO SER 
LYS SER CYS GLN VAL GLU ASN GLY ARG VAL 
ILE ALA CYS PHE ASP SER LEU LYS GLY ARG 
CYS SER ARG GLU ASN CYS LYS TYR LEU HIS 
PRO PRO PRO HIS LEU LYS THR GLN LEU GLU 
ILE ASN GLY ARG ASN ASN LEU ILE GLN GLN 
LYS ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
