segName='   A'
seq="""
GLY THR ASP ASN ARG HIS ALA ALA ASP TYR 
GLN GLN LEU ARG GLU ARG LEU ILE GLN GLU 
LEU ASN LEU THR PRO GLN GLN LEU HIS GLU 
GLU SER ASN LEU ILE GLN ALA GLY LEU ASP 
SER ILE ARG LEU MET ARG TRP LEU HIS TRP 
PHE ARG LYS ASN GLY TYR ARG LEU THR LEU 
ARG GLU LEU TYR ALA ALA PRO THR LEU ALA 
ALA TRP ASN GLN LEU MET LEU SER ARG SER 
PRO GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
