segName='   A'
seq="""
SER GLU PHE GLU LYS LEU ARG GLN THR GLY 
ASP GLU LEU VAL GLN ALA PHE GLN ARG LEU 
ARG GLU ILE PHE ASP LYS GLY ASP ASP ASP 
SER LEU GLU GLN VAL LEU GLU GLU ILE GLU 
GLU LEU ILE GLN LYS HIS ARG GLN LEU PHE 
ASP ASN ARG GLN GLU ALA ALA ASP THR GLU 
ALA ALA LYS GLN GLY ASP GLN TRP VAL GLN 
LEU PHE GLN ARG PHE ARG GLU ALA ILE ASP 
LYS GLY ASP LYS ASP SER LEU GLU GLN LEU 
LEU GLU GLU LEU GLU GLN ALA LEU GLN LYS 
ILE ARG GLU LEU ALA GLU LYS LYS ASN
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
