segName='   A'
seq="""
ASP LYS TRP THR VAL GLN PRO ILE VAL LEU 
PRO GLU LYS ASP SER TRP THR VAL ASN ASP 
ILE GLN LYS LEU VAL GLY LYS LEU ASN TRP 
ALA SER GLN ILE TYR PRO GLY ILE LYS VAL 
ARG GLN LEU SER LYS LEU LEU ARG GLY THR 
LYS ALA LEU THR GLU VAL ILE PRO LEU THR 
GLU GLU ALA GLU LEU GLU LEU ALA GLU ASN 
ARG GLU ILE LEU LYS GLU PRO VAL HIS GLY 
VAL TYR LEU GLU HIS HIS HIS HIS HIS HIS 
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
