segName='   A'
seq="""
SER ASP GLU MET PRO SER GLU CYS ILE SER 
ARG ARG GLU LEU GLU LYS GLY ARG ILE SER 
ARG GLU GLU MET GLU THR LEU SER VAL PHE 
ARG SER TYR GLU PRO GLY GLU PRO ASN CYS 
ARG ILE TYR VAL LYS ASN LEU ALA LYS HIS 
VAL GLN GLU LYS ASP LEU LYS TYR ILE PHE 
GLY ARG TYR VAL ASP PHE SER SER GLU THR 
GLN ARG ILE MET PHE ASP ILE ARG LEU MET 
LYS GLU GLY ARG MET LYS GLY GLN ALA PHE 
ILE GLY LEU PRO ASN GLU LYS ALA ALA ALA 
LYS ALA LEU LYS GLU ALA ASN GLY TYR VAL 
LEU PHE GLY LYS PRO MET VAL VAL GLN PHE 
ALA ARG SER ALA ARG PRO LYS GLN ASP PRO 
LYS GLU GLY LYS ARG LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
