segName='   A'
seq="""
MET VAL LEU ARG GLN LEU SER ARG LYS ALA 
SER VAL LYS VAL SER LYS THR TRP SER GLY 
THR LYS LYS ARG ALA GLN ARG ILE LEU ILE 
PHE LEU LEU GLU PHE LEU LEU ASP PHE CYS 
THR GLY GLU ASP SER VAL ASP GLY LYS LYS 
ARG GLN ARG HIS SER GLY LEU THR GLU GLN 
THR TYR SER ALA LEU PRO GLU PRO LYS ALA 
THR
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
