segName='   A'
seq="""
GLY SER VAL ASP ASN THR LEU GLY SER ASP 
ARG SER ASN GLU LEU GLU ILE ARG GLY LYS 
TYR VAL VAL VAL PRO GLU THR SER GLN ASP 
MET ALA PHE LYS CYS PRO ILE CYS LYS GLU 
THR VAL THR GLY VAL TYR ASP GLU GLU SER 
GLY GLU TRP VAL TRP LYS ASN THR ILE GLU 
VAL ASN GLY LYS TYR PHE HIS SER THR CYS 
TYR HIS GLU THR SER GLN ASN SER SER LYS 
SER ASN SER GLY LYS VAL GLY LEU ASP ASP 
LEU LYS LYS LEU VAL THR LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
