segName='   A'
seq="""
GLY SER LYS LYS GLN GLN THR GLU SER ALA 
GLU ASN LYS GLU LYS ILE CYS ASN ALA ALA 
LYS ASP ASN GLN LYS ALA CYS GLU ASN LEU 
LYS GLU LYS GLY CYS VAL PHE ASN THR GLU 
SER ASN LYS CYS GLU LEU LYS LYS ASP VAL 
LYS GLU LYS LEU GLU LYS GLU SER LYS GLU 
THR GLU GLY LYS ASP GLU LYS ALA ASN THR 
THR GLY SER
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
