segName='   A'
seq="""
ALA ILE SER CYS GLY ALA VAL THR SER ASP 
LEU SER PRO CYS LEU THR TYR LEU THR GLY 
GLY PRO GLY PRO SER PRO GLN CYS CYS GLY 
GLY VAL LYS LYS LEU LEU ALA ALA ALA ASN 
THR THR PRO ASP ARG GLN ALA ALA CYS ASN 
CYS LEU LYS SER ALA ALA GLY SER ILE THR 
LYS LEU ASN THR ASN ASN ALA ALA ALA LEU 
PRO GLY LYS CYS GLY VAL ASN ILE PRO TYR 
LYS ILE SER THR THR THR ASN CYS ASN THR 
VAL LYS PHE
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
