segName='   A'
seq="""
MET SER ASP TYR LEU LYS VAL LEU GLN ALA 
ILE LYS SER CYS PRO LYS THR PHE GLN SER 
ASN TYR VAL ARG ASN ASN ALA SER LEU VAL 
ALA GLU ALA ALA SER ARG GLY HIS ILE SER 
CYS ALA THR THR SER GLY ARG ASN GLY GLY 
ALA TRP GLU ILE THR ALA SER GLY THR ARG 
PHE LEU LYS ARG MET GLY GLY CYS VAL
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
