segName='   A'
seq="""
ILE LEU GLU ALA HIS TYR THR ASN LEU LYS 
CYS ARG CYS SER GLY VAL ILE SER THR VAL 
VAL GLY LEU ASN ILE ILE ASP ARG ILE GLN 
VAL THR PRO PRO GLY ASN GLY CYS PRO LYS 
THR GLU VAL VAL ILE TRP THR LYS MET LYS 
LYS VAL ILE CYS VAL ASN PRO ARG ALA LYS 
TRP LEU GLN ARG LEU LEU ARG HIS VAL GLN 
SER LYS SER LEU SER SER THR PRO GLN ALA 
PRO VAL SER LYS ARG ARG ALA ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
