segName='   A'
seq="""
ALA TYR ARG PRO SER GLU THR LEU CYS GLY 
GLY GLU LEU VAL ASP THR LEU GLN PHE VAL 
CYS GLY ASP ARG GLY PHE TYR PHE SER ARG 
PRO ALA SER ARG VAL SER ARG ARG SER PRO 
GLN ARG GLY ILE VAL GLU GLU CYS CYS PHE 
ARG SER CYS ASP LEU ALA LEU LEU GLU THR 
TYR CYS ALA THR PRO ALA LYS SER GLU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
