segName='   A'
seq="""
MET HIS HIS HIS HIS HIS HIS SER ASN ALA 
THR GLY PRO GLN PHE VAL SER GLY VAL ILE 
VAL LYS ILE ILE SER THR GLU PRO LEU PRO 
GLY ARG LYS GLN VAL ARG ASP THR LEU ALA 
ALA ILE SER GLU VAL LEU TYR VAL ASP LEU 
LEU GLU GLY ASP THR GLU CYS HIS ALA ARG 
PHE LYS THR PRO GLU ASP ALA GLN ALA VAL 
ILE ASN ALA TYR THR GLU ILE ASN LYS LYS 
HIS CYS TRP LYS LEU GLU ILE LEU SER GLY 
ASP HIS GLU GLN ARG TYR TRP GLN LYS ILE 
LEU VAL ASP ARG GLN ALA LYS LEU ASN GLN 
PRO ARG GLU LYS LYS ARG GLY THR GLU LYS 
LEU ILE THR LYS ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
