segName='   A'
seq="""
G G C G A U G G U G 
U U C G C C A U A A 
A C G C U C U U C G 
G A G C U A A U G A 
C A C C U A C
"""
patch_list=[]
seqType='rna'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
