segName='   D'
seq="""
MET SER GLU GLN ASN ASN THR GLU MET THR 
PHE GLN ILE GLN ARG ILE TYR THR LYS ASP 
ILE SER PHE GLU ALA PRO ASN ALA PRO HIS 
VAL PHE GLN LYS ASP TRP GLN PRO GLU VAL 
LYS LEU ASP LEU ASP THR ALA SER SER GLN 
LEU ALA ASP ASP VAL TYR GLU VAL VAL LEU 
ARG VAL THR VAL THR ALA SER LEU GLY GLU 
GLU THR ALA PHE LEU CYS GLU VAL GLN GLN 
GLY GLY ILE PHE SER ILE ALA GLY ILE GLU 
GLY THR GLN MET ALA HIS CYS LEU GLY ALA 
TYR CYS PRO ASN ILE LEU PHE PRO TYR ALA 
ARG GLU CYS ILE THR SER MET VAL SER ARG 
GLY THR PHE PRO GLN LEU ASN LEU ALA PRO 
VAL ASN PHE ASP ALA LEU PHE MET ASN TYR 
LEU GLN GLN GLN ALA GLY GLU GLY THR GLU 
GLU HIS GLN ASP ALA
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
