segName='   A'
seq="""
ALA ASP GLN LEU THR GLU GLU GLN ILE ALA 
GLU PHE LYS GLU ALA PHE SER LEU PHE ASP 
LYS ASP GLY ASP GLY THR ILE THR THR LYS 
GLU LEU GLY THR VAL MET ARG SER LEU GLY 
GLN ASN PRO THR GLU ALA GLU LEU GLN ASP 
MET ILE ASN GLU VAL ASP ALA ASP GLY ASN 
GLY THR ILE ASP PHE PRO GLU PHE LEU THR 
MET MET ALA ARG LYS MET LYS ASP THR ASP 
SER GLU GLU GLU ILE ARG GLU ALA PHE ARG 
VAL PHE ASP LYS ASP GLY ASN GLY TYR ILE 
SER ALA ALA GLU LEU ARG HIS VAL MET THR 
ASN LEU GLY GLU LYS LEU THR ASP GLU GLU 
VAL ASP GLU MET ILE ARG GLU ALA ASP ILE 
ASP GLY ASP GLY GLN VAL ASN TYR GLU GLU 
PHE VAL GLN MET MET THR ALA LYS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
