segName='   B'
seq="""
MET ARG GLY SER ASN ALA PRO GLN PRO SER 
HIS ILE SER LYS TYR ILE LEU ARG TRP ARG 
PRO LYS ASN SER VAL GLY ARG TRP LYS GLU 
ALA THR ILE PRO GLY HIS LEU ASN SER TYR 
THR ILE LYS GLY LEU LYS PRO GLY VAL VAL 
TYR GLU GLY GLN LEU ILE SER ILE GLN GLN 
TYR GLY HIS GLN GLU VAL THR ARG PHE ASP 
PHE THR THR THR SER THR SER THR PRO GLY 
SER ARG SER HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
