segName='   A'
seq="""
MET LYS ALA PRO SER TYR HIS VAL VAL ARG 
GLY ASP ILE ALA THR ALA THR GLU GLY VAL 
ILE ILE ASN ALA ALA ASN SER LYS GLY GLN 
PRO GLY GLY GLY VAL CYS GLY ALA LEU TYR 
LYS LYS PHE PRO GLU SER PHE ASP LEU GLN 
PRO ILE GLU VAL GLY LYS ALA ARG LEU VAL 
LYS GLY ALA ALA LYS HIS ILE ILE HIS ALA 
VAL GLY PRO ASN PHE ASN LYS VAL SER GLU 
VAL GLU GLY ASP LYS GLN LEU ALA GLU ALA 
TYR GLU SER ILE ALA LYS ILE VAL ASN ASP 
ASN ASN TYR LYS SER VAL ALA ILE PRO LEU 
LEU SER THR GLY ILE PHE SER GLY ASN LYS 
ASP ARG LEU THR GLN SER LEU ASN HIS LEU 
LEU THR ALA LEU ASP THR THR ASP ALA ASP 
VAL ALA ILE TYR CYS ARG ASP LYS LYS TRP 
GLU MET THR LEU LYS GLU ALA VAL ALA ARG 
ARG GLU HIS HIS HIS HIS HIS HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
