segName='   B'
seq="""
PRO ILE VAL GLN ASN LEU GLN GLY GLN MET 
VAL HIS GLN ALA ILE SER PRO ARG THR LEU 
ASN ALA TRP VAL LYS VAL VAL GLU GLU LYS 
ALA PHE SER PRO GLU VAL ILE PRO MET PHE 
SER ALA LEU SER GLU GLY ALA THR PRO GLN 
ASP LEU ASN THR MET LEU ASN THR VAL GLY 
GLY HIS GLN ALA ALA MET GLN MET LEU LYS 
GLU THR ILE ASN GLU GLU ALA ALA GLU TRP 
ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO 
ILE ALA PRO GLY GLN MET ARG GLU PRO ARG 
GLY SER ASP ILE ALA GLY THR THR SER THR 
LEU GLN GLU GLN ILE GLY TRP MET THR HIS 
ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR 
LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS 
ILE VAL ARG MET TYR SER PRO THR SER ILE 
LEU ASP ILE ARG GLN GLY PRO LYS GLU PRO 
PHE ARG ASP TYR VAL ASP ARG PHE TYR LYS 
THR LEU ARG ALA GLU GLN ALA SER GLN GLU 
VAL LYS ASN TRP MET THR GLU THR LEU LEU 
VAL GLN ASN ALA ASN PRO ASP CYS LYS THR 
ILE LEU LYS ALA LEU GLY PRO GLY ALA THR 
LEU GLU GLU MET MET THR ALA CYS GLN GLY 
VAL GLY GLY PRO GLY HIS LYS ALA ARG VAL 
LEU
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
