segName='   A'
seq="""
GLY SER HIS MET ARG LEU ASN GLY LEU SER 
PRO GLN GLN GLN GLN GLN THR LEU ALA THR 
LEU VAL ALA ALA ALA THR ALA THR VAL LEU 
GLY HIS HIS THR PRO GLU SER ILE SER PRO 
ALA THR ALA PHE LYS ASP LEU GLY ILE ASP 
SER LEU THR ALA LEU GLU LEU ARG ASN THR 
LEU THR HIS ASN THR GLY LEU ASP LEU PRO 
PRO THR LEU ILE PHE ASP HIS PRO THR PRO 
HIS ALA LEU THR GLN HIS LEU HIS THR ARG 
LEU THR GLN SER HIS
"""
patch_list=[]
seqType='prot'
seqSplit = seq.split()
#print "finished reading ["+`len(seqSplit)`+"] residue(s) for a ["+seqType+"] type segi: ["+segName+"]"
